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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26287126_26296174_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26287126 - 26296174
Intron Length:
9049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTCTTTCATC
Flanking Amino Acid:
YSKSPSQIYQESLVYANRTL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.3
0.79
0.8
86
26.8
Minor 5ss
45
-0.5
2.6
57.3
47.4
Minor BPS
63.9
0.42
1.7
73.34
38.7

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003943
26252038 - 26312075
60038
ENSAPLT00000022757
26280553 - 26312075
31523
ENSAPLT00000019936
26278676 - 26312075
33400