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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26301092_26301657_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26301092 - 26301657
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CAAAATATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
NQDFIKKNIELAKDSGNQIA
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
64.7
0.33
1.1
59.2
45.2
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022757
26280553 - 26312075
31523
ENSAPLT00000019936
26278676 - 26312075
33400
ENSAPLT00000003943
26252038 - 26312075
60038