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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26303990_26307432_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26303990 - 26307432
Intron Length:
3443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACATTTTAAAT
Flanking Amino Acid:
NLISSWQDTADPFHVKEDEI
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.4
0.82
0.7
80.9
30.3
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
58.9
0.36
1.4
70.54
40.3

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022757
26280553 - 26312075
31523
ENSAPLT00000019936
26278676 - 26312075
33400
ENSAPLT00000003943
26252038 - 26312075
60038