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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26307518_26308429_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26307518 - 26308429
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
MRTKLWKELQSDNSTGSHEE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
85.7
30.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.3
0.57
0.9
74
34.5
Minor 5ss
35.8
-1.6
3
49.8
46.1
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019936
26278676 - 26312075
33400
ENSAPLT00000003943
26252038 - 26312075
60038
ENSAPLT00000022757
26280553 - 26312075
31523