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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26308603_26309626_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26308603 - 26309626
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
ATCTAATCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATGTGTCAAAT
Flanking Amino Acid:
KFCEPSQGKTTDSSKLEDSE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
58.8
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74
0.54
0.9
66.1
39.1
Minor 5ss
32.8
-2
3.3
40.3
39.6
Minor BPS
44.4
-0.3
2.3
66.16
44.3

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019936
26278676 - 26312075
33400
ENSAPLT00000003943
26252038 - 26312075
60038
ENSAPLT00000022757
26280553 - 26312075
31523