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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26309711_26310616_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26309711 - 26310616
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
ATATTGTGAAAG
Flanking Amino Acid:
QECVLNPNESGCVSNSDSGD
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.3
40.6
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
22.1
-3.2
3.4
29
43.5
Minor BPS
44.5
-0.5
2.2
52.65
41.6

Associated Gene:

Gene:
FSIP1
Ensembl Gene ID:
ENSAPLG00000003851
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019936
26278676 - 26312075
33400
ENSAPLT00000003943
26252038 - 26312075
60038
ENSAPLT00000022757
26280553 - 26312075
31523