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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26353727_26355316_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26353727 - 26355316
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCCTGGAAG
5'SS Class:
major
3'SS Sequence:
TTTTCCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACTTTTAAAT
Flanking Amino Acid:
QDFQDLRQGRVRQPPEINLV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.3
51.4
45.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.7
82.7
27.4
Minor 5ss
22.3
-3.2
3.7
22.2
37.3
Minor BPS
56.6
0.29
1.3
67.16
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029800
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046266
26353583 - 26356686
3104