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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26362000_26363421_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26362000 - 26363421
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
GTCCACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
ATTTTTTTGAGA
Flanking Amino Acid:
KHRPNSAGRSKRERQFSVGN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
70.3
0.46
0.9
62.3
38.1
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
60.7
0.33
1.6
71.39
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160