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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26366646_26367000_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26366646 - 26367000
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCAATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATTTGTTCAATT
Flanking Amino Acid:
GKGAFGAVIKVRNKLDGCYY
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
79.2
0.72
1
75
40
Major PPT
82.8
0.74
0.9
80.5
36.7
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
56.9
0.29
1.9
78.23
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160