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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26381063_26381181_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26381063 - 26381181
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
GTCTTGTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
TTTGTCTTGTTT
Flanking Amino Acid:
LAAGGRYDHLIPQFRGPQTV
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
60.9
0.25
1.7
72.5
42.4
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
44.8
-0.3
3.5
77.73
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160