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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26381290_26381984_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26381290 - 26381984
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
ACTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTCACTT
Flanking Amino Acid:
TAAVSSMEDSISVSSCDLLV
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
72.1
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.7
81.8
29.5
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
49.9
0.08
1.8
70.83
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160