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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26382114_26383137_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26382114 - 26383137
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATTT
5'SS Class:
major
3'SS Sequence:
CTTCCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTCTTCCTATTT
Flanking Amino Acid:
PAEIMYDWSQSQEELQEYCR
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.9
36.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.8
0.76
0.8
81.2
29.1
Minor 5ss
41.8
-0.9
3.5
64.3
47.2
Minor BPS
48.4
-0
1.9
67.42
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160