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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26383225_26384381_F

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
26383225 - 26384381
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
AAATACATCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
AATCACTGAAAT
Flanking Amino Acid:
VSDKEGSHVKVKSFEKDRQT
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
56.4
0.14
1
48.2
39
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
49.9
0.07
1.7
69.44
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160