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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26384495_26386055_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26384495 - 26386055
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATTGTTAACT
Flanking Amino Acid:
KTKICDERCSRETSDNLSVP
Intron Amino Acid Position:
1287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
69.2
0.68
2
88.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160