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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26386115_26387170_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26386115 - 26387170
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAGT
5'SS Class:
major
3'SS Sequence:
ATTTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAATCTAAAACT
Flanking Amino Acid:
NQKGSFANISGVFESHGTLA
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76.3
38.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
77.7
0.62
0.9
75.2
39
Minor 5ss
43.6
-0.7
2.6
60.7
43.6
Minor BPS
53.7
0.2
1.9
75.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160