Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_263867_269187_F

Intron Information:

Intron Rank:

138725

Intron Class:

major

Intron Phase:

Intron Coordinates:

263867 - 269187

Intron Length:

5321

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TTTATCATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTTGCTTTATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.1

69.1

41.9

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

0.79

0.8

82.3

33.9

Minor 5ss

38.3

-1.3

3.3

46.2

Minor BPS

67.1

0.53

1.7

78.76

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019113

263397 - 269469

6073