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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26388460_26388878_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26388460 - 26388878
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GATTTCTTAATG
Flanking Amino Acid:
QKTSEIEILAVDLPKETVIH
Intron Amino Acid Position:
1363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80
0.68
0.9
73.7
40.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
72.3
0.56
1.3
69
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160