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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26390131_26391296_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26390131 - 26391296
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTAAAAACT
Flanking Amino Acid:
DEIYSIKMEKRVPALILYSY
Intron Amino Acid Position:
1419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.5
0.89
0.6
84.5
23.1
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
47.9
-0
2.1
74.65
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003298
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003402
26359192 - 26391351
32160