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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26396007_26399265_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26396007 - 26399265
Intron Length:
3259

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCACAGAAC
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
CTTCTCTTGCAG
Flanking Amino Acid:
LLEFFFFISLFLTELTRLFQ
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.2
59.8
41.7
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
20.7
-3.4
4
29.8
38.3
Minor BPS
38.2
-1
3.4
52.31
42.6

Associated Gene:

Gene:
SRP14
Ensembl Gene ID:
ENSAPLG00000027593
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027955
26393461 - 26399301
5841