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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26467224_26468166_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26467224 - 26468166
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTCTGATCT
Flanking Amino Acid:
VTEEPRRLFYGNAGYRLHVP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.1
0.63
0.8
72.9
32
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
61.2
0.43
1.7
80.23
41.8

Associated Gene:

Gene:
BMF
Ensembl Gene ID:
ENSAPLG00000003169
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003220
26453727 - 26469573
15847