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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26678707_26685800_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26678707 - 26685800
Intron Length:
7094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TACTTGTTAGAT
Flanking Amino Acid:
TKYLKVQQLLETLIDWCDEK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
45.7
-0.2
2.3
65.75
44.7

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045691
26627385 - 26825280
197896