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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26716175_26722975_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26716175 - 26722975
Intron Length:
6801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAGTC
Flanking Amino Acid:
LICQVARKGHRNAFNLYCQP
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
100
1.24
0.5
100
0
Major PPT
68.7
0.42
1
64.7
41.4
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
51.3
0.02
1.8
66.53
39.6

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002583
26567734 - 26825097
257364
ENSAPLT00000045691
26627385 - 26825280
197896
ENSAPLT00000042678
26538019 - 26825097
287079
ENSAPLT00000034047
26685321 - 26825097
139777
ENSAPLT00000023331
26479665 - 26825280
345616