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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26723249_26724510_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26723249 - 26724510
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTATTCATAGCT
Flanking Amino Acid:
HI*LQQPLQLRSIHPTPVQQ
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
64.9
0.34
1
63.7
42.8
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
53.8
0.2
1.9
74.67
41.5

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042678
26538019 - 26825097
287079
ENSAPLT00000023331
26479665 - 26825280
345616
ENSAPLT00000002583
26567734 - 26825097
257364
ENSAPLT00000045691
26627385 - 26825280
197896