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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26723249_26730357_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26723249 - 26730357
Intron Length:
7109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TATTTTTTGACC
Flanking Amino Acid:
HITAAAIAAKIPDSIISRGV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80.6
0.69
0.9
85.9
25.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
73.6
0.73
1.1
77.76
31.6

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034047
26685321 - 26825097
139777