Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26730493_26776150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26730493 - 26776150

Intron Length:

45658

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

GCTCTCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

ACTTCTGTAGCT

Flanking Amino Acid:

VSPLHPAQHQKSSLGAAARR

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.5

27.8

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

79.4

0.66

0.8

73.1

31.8

Minor 5ss

37.7

-1.4

2.7

44.2

Minor BPS

50.2

0.08

2.2

73.74

43.6

Associated Gene:

Gene:

GPHN

Ensembl Gene ID:

ENSAPLG00000002496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002583

26567734 - 26825097

257364

ENSAPLT00000045691

26627385 - 26825280

197896

ENSAPLT00000034047

26685321 - 26825097

139777

ENSAPLT00000023331

26479665 - 26825280

345616