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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26788690_26794220_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26788690 - 26794220
Intron Length:
5531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTCTTTTCAAAA
Flanking Amino Acid:
SS*GNPRLVSSQLKL*CLVR
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
49.8
-0
1.6
59.73
40.7

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034047
26685321 - 26825097
139777
ENSAPLT00000023331
26479665 - 26825280
345616
ENSAPLT00000002583
26567734 - 26825097
257364
ENSAPLT00000045691
26627385 - 26825280
197896
ENSAPLT00000042678
26538019 - 26825097
287079