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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26799353_26800152_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26799353 - 26800152
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAA
U12 Branch Point Sequence:
CCTTGTTTTATA
Flanking Amino Acid:
QWLQSCQQGMSY*ILKMTSC
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
59.3
0.23
1.2
70.5
35.7
Major PPT
80.8
0.69
0.8
75.5
33
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
47.3
-0.2
2
57.82
42.6

Associated Gene:

Gene:
GPHN
Ensembl Gene ID:
ENSAPLG00000002496
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034047
26685321 - 26825097
139777
ENSAPLT00000023331
26479665 - 26825280
345616
ENSAPLT00000002583
26567734 - 26825097
257364
ENSAPLT00000045691
26627385 - 26825280
197896
ENSAPLT00000042678
26538019 - 26825097
287079