Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26800275_26817590_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26800275 - 26817590

Intron Length:

17316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

ATGCCACTAATC

Flanking Amino Acid:

QQSTWELWEITQMIY*MH*M

Intron Amino Acid Position:

565

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

81.6

29.9

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

87.8

0.85

0.6

84.9

22.8

Minor 5ss

38.7

-1.3

2.7

47.6

34.4

Minor BPS

47.9

-0.1

1.9

60.57

38.2

Associated Gene:

Gene:

GPHN

Ensembl Gene ID:

ENSAPLG00000002496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002583

26567734 - 26825097

257364

ENSAPLT00000045691

26627385 - 26825280

197896

ENSAPLT00000034047

26685321 - 26825097

139777

ENSAPLT00000023331

26479665 - 26825280

345616