Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26807642_26817590_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26807642 - 26817590

Intron Length:

9949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGCACC

5'SS Class:

major

3'SS Sequence:

TTCTTTTCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

ATGCCACTAATC

Flanking Amino Acid:

QNTAETGLPDCPDDLLNALN

Intron Amino Acid Position:

618

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

67.6

37.6

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

87.8

0.85

0.6

84.9

22.8

Minor 5ss

35.3

-1.7

2.8

41.4

39.1

Minor BPS

47.9

-0.1

1.9

60.57

38.2

Associated Gene:

Gene:

GPHN

Ensembl Gene ID:

ENSAPLG00000002496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042678

26538019 - 26825097

287079