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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26838997_26839582_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26838997 - 26839582
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTCCCCTTACA
Flanking Amino Acid:
SSQLEQLALSRFLPLKFVEL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
86.6
0.82
0.7
80.5
24.9
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
60.1
0.31
2
78.44
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002494
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002501
26834351 - 26839886
5536