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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2685544_2725973_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2685544 - 2725973

Intron Length:

40430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

GTTGGTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

TATTGTCTAACG

Flanking Amino Acid:

MVLDKEDGVPMLSVQPK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

64.1

41.8

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

72.8

0.51

1.1

65.2

45.5

Minor 5ss

32.1

-2

3.4

43.3

44.5

Minor BPS

51.3

-0.1

2.1

65.12

42.7

Associated Gene:

Gene:

LMO1

Ensembl Gene ID:

ENSAPLG00000029620

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042291

2685522 - 2737847

52326

ENSAPLT00000028563

2685522 - 2741505

55984