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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2685544_2735913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2685544 - 2735913

Intron Length:

50370

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

GCTTCTTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTCTAATGATT

Flanking Amino Acid:

ARDDGAGQGGRLFGTTGNCA

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

64.1

41.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

75.7

0.58

72.4

37.7

Minor 5ss

32.1

-2

3.4

43.3

44.5

Minor BPS

45.8

-0.2

1.8

66.1

38.6

Associated Gene:

Gene:

LMO1

Ensembl Gene ID:

ENSAPLG00000029620

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017249

2685035 - 2741505

56471