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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2688054_2689005_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2688054 - 2689005
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TGTACCGTAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
80.8
0.69
0.9
72.8
42.2
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
51.6
0.13
2.3
77.8
44.1

Associated Gene:

Gene:
LMO1
Ensembl Gene ID:
ENSAPLG00000029620
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017925
2687866 - 2741505
53640