About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26894175_26895791_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26894175 - 26895791
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
TAAATGCTTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCTTTTAAAT
Flanking Amino Acid:
DNQPLAGLIPGKSFQQQREA
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
69.2
36.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.7
0.22
1.2
61.1
44.3
Minor 5ss
33
-1.9
3
37.5
42.3
Minor BPS
65.7
0.57
1.4
77.95
38.5

Associated Gene:

Gene:
MPP5
Ensembl Gene ID:
ENSAPLG00000000613
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036235
26878953 - 26903013
24061
ENSAPLT00000000929
26878953 - 26904125
25173