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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26898130_26899429_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26898130 - 26899429
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTCAATAATT
Flanking Amino Acid:
KICLLNLHTQSLKTLRNSDL
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
59.3
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.5
0.87
0.6
84
24
Minor 5ss
28.3
-2.5
3.5
38
46.9
Minor BPS
62
0.45
1.9
83.41
37

Associated Gene:

Gene:
MPP5
Ensembl Gene ID:
ENSAPLG00000000613
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036235
26878953 - 26903013
24061
ENSAPLT00000000929
26878953 - 26904125
25173