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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26906677_26907307_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26906677 - 26907307
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
LDEREREEFYRLKKIQEKKK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
85.3
32.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
45.8
-0.4
2.6
63
41.5
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
ATP6V1D
Ensembl Gene ID:
ENSAPLG00000015308
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015968
26906114 - 26915035
8922