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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26907387_26908350_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26907387 - 26908350
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTTTATATTT
Flanking Amino Acid:
TNRRVNAIEHVIIPRIERTL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84.1
0.77
0.8
81.7
35.6
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
49.5
0.05
1.8
71.68
40.3

Associated Gene:

Gene:
ATP6V1D
Ensembl Gene ID:
ENSAPLG00000015308
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015968
26906114 - 26915035
8922