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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26908418_26908849_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26908418 - 26908849
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGATGGG
5'SS Class:
major
3'SS Sequence:
TCCTGTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TATGCCTTACTT
Flanking Amino Acid:
ELLVELASLQTSFITLDEAI
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.3
52.5
44.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
77.1
0.61
0.8
71.5
33.1
Minor 5ss
26.4
-2.7
3.2
32.2
42.4
Minor BPS
65.5
0.57
1.7
80.78
41.5

Associated Gene:

Gene:
ATP6V1D
Ensembl Gene ID:
ENSAPLG00000015308
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015968
26906114 - 26915035
8922