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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26909472_26910181_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26909472 - 26910181
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTCTT
5'SS Class:
major
3'SS Sequence:
TCACTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTGCTCACTT
Flanking Amino Acid:
KIRAKKDNVAGVTLPVFEHY
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
77.8
38.7
Major BPS
69.2
0.48
1
61
37.1
Major PPT
71.5
0.48
1
65.3
40.9
Minor 5ss
40.3
-1.1
3.1
58.6
45.9
Minor BPS
48.2
-0
2.2
71.5
46

Associated Gene:

Gene:
ATP6V1D
Ensembl Gene ID:
ENSAPLG00000015308
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015968
26906114 - 26915035
8922