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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26911689_26912843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26911689 - 26912843
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
FRQILKKIIETKLLMGEVMR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
ATP6V1D
Ensembl Gene ID:
ENSAPLG00000015308
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015968
26906114 - 26915035
8922