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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26921824_26926443_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26921824 - 26926443
Intron Length:
4620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTGTATTAATA
Flanking Amino Acid:
VLKEGFLVKRGHVVHNWKVR
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
70.4
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.6
0.64
0.7
70.6
30.5
Minor 5ss
33.5
-1.9
3.5
41.3
45.2
Minor BPS
56.7
0.21
1.7
67.42
39.7

Associated Gene:

Gene:
PLEK2
Ensembl Gene ID:
ENSAPLG00000014782
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042432
26918036 - 26934344
16309