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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26926368_26926443_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26926368 - 26926443
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTGTATTAATA
Flanking Amino Acid:
SFHVVPYWLMGHVVHNWKVR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
67.9
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.6
0.64
0.7
70.6
30.5
Minor 5ss
42.3
-0.8
2.4
49.4
41.5
Minor BPS
56.7
0.21
1.7
67.42
39.7

Associated Gene:

Gene:
PLEK2
Ensembl Gene ID:
ENSAPLG00000014782
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015419
26926323 - 26930887
4565