Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_269279_271021_F

Intron Information:

Intron Rank:

138726

Intron Class:

major

Intron Phase:

Intron Coordinates:

269279 - 271021

Intron Length:

1743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTAAAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

66.3

0.37

1.2

69.9

38.5

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

76.9

0.84

1.2

83.98

29.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028220

268474 - 272564

4091