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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26932032_26932863_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26932032 - 26932863
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATCT
Flanking Amino Acid:
SALEDNGVPAGVKGNVQGNL
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
66.8
0.61
1.8
84.91
41.5

Associated Gene:

Gene:
PLEK2
Ensembl Gene ID:
ENSAPLG00000014782
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042432
26918036 - 26934344
16309