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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26935326_26935707_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26935326 - 26935707
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGGCCTCTAAAG
Flanking Amino Acid:
FPFTAGDTFKMEFLCEHQQI
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
84.5
0.78
0.8
80.4
31.6
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
46.9
-0.3
1.8
51.83
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014711
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015335
26935182 - 26939894
4713