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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26954203_26954793_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26954203 - 26954793
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
PEDTTSAQPAGTDCSSVFPQ
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.5
36.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
27.7
-2.6
3
35.3
41.2
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239