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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26956445_26957068_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26956445 - 26957068
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAGC
5'SS Class:
major
3'SS Sequence:
AATTGTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GATTAATTAATT
Flanking Amino Acid:
TSSELSTSTSEGSTSNVSGS
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.4
39.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.4
0.62
0.9
69.6
40.8
Minor 5ss
40
-1.1
2.8
52.9
43.9
Minor BPS
59.8
0.39
1.8
76.77
39.1

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239