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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26957221_26958497_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26957221 - 26958497
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
LRGNFVEAHQVALMFNLDTS
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.3
0.5
1.1
75.8
37
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239