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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26963255_26963871_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26963255 - 26963871
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCAGTTTTATCT
Flanking Amino Acid:
DVVLSCATAEGKDGWQYLFP
Intron Amino Acid Position:
1247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
51.9
0.14
1.7
67.39
44.1

Associated Gene:

Gene:
ZFYVE26
Ensembl Gene ID:
ENSAPLG00000014809
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044763
26944895 - 26985133
40239
ENSAPLT00000015469
26944895 - 26985133
40239