About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_26967964_26969020_F


Intron Information:

Intron Rank:
24

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
26967964 - 26969020

Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGACTGTC

5'SS Class:
major

3'SS Sequence:
TACTCTGTCCTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAC

U12 Branch Point Sequence:
TATTCTCTGATT

Flanking Amino Acid:
FPYALKEKRSDSVIRIQENL

Intron Amino Acid Position:
1530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.1
0.69
1.1
75.7
34.4

Major BPS
86.6
0.91
0.8
77.7
36.7

Major PPT
69.1
0.43
0.9
61.5
39.7

Minor 5ss
37.3
-1.4
3.3
52
45.2

Minor BPS
62.6
0.48
1.6
80.5
35.3

Associated Gene:

Gene:
ZFYVE26

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26944895 - 26985133
40239

26944895 - 26985133
40239